<html><body><title>AT3G50835.1</title>(&uarr; Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u325083501000i/AT3G50835.1.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u325083501000i/AT3G50835.1.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u325083501000i/AT3G50835.1.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u422331001000i">AT4G23310.1</a></td><td>0.771384</td><td>receptor-like protein kinase, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127858001000i">AT1G78580.1</a></td><td>0.768925</td><td>ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE)</td><td>OMAT1P120640</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u322142001000i">AT3G21420.1</a></td><td>0.745764</td><td>oxidoreductase, 2OG-Fe(II) oxygenase family protein</td><td>OMAT3P008160</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u124940501000i">AT1G49405.1</a></td><td>0.74018</td><td>integral membrane protein, putative</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u421646001000i">AT4G16460.1</a></td><td>0.739668</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u321696001000i">AT3G16960.1</a></td><td>0.738956</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u224252001000i">AT2G42520.1</a></td><td>0.737353</td><td>DEAD box RNA helicase, putative</td><td>OMAT2P011540</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u125596401000i">AT1G55964.1</a></td><td>0.732686</td><td>pseudogene of myb family transcription factor</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420659201000i">AT4G06592.1</a></td><td>0.730407</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423998601000i">AT4G39986.1</a></td><td>0.726014</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u420655501000i">AT4G06555.1</a></td><td>-0.811898</td><td>transposable element gene</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u127577001000i">AT1G75770.1</a></td><td>-0.764123</td><td>unknown protein</td><td>OMAT1P022140</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u121291001000i">AT1G12910.1</a></td><td>-0.7641</td><td>ATAN11 (ANTHOCYANIN11)</td><td>OMAT1P104145</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u123667501000i">AT1G36675.1</a></td><td>-0.759461</td><td>glycine-rich protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u423254001000i">AT4G32540.1</a></td><td>-0.752908</td><td>YUC1 (YUCCA 1)</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u220364002000i">AT2G03640.2</a></td><td>-0.727401</td><td>nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein</td><td>OMAT2P100780</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u223573601000i">AT2G35736.1</a></td><td>-0.727232</td><td>unknown protein</td><td>-</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u120901001000i">AT1G09010.1</a></td><td>-0.723179</td><td>glycoside hydrolase family 2 protein</td><td>OMAT1P102750</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u521424001000i">AT5G14240.1</a></td><td>-0.719456</td><td>FUNCTIONS IN: molecular_function unknown</td><td>OMAT5P104020</td><td>-</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s2ria00227u222307001000i">AT2G23070.1</a></td><td>-0.717605</td><td>casein kinase II alpha chain, putative</td><td>OMAT2P103980</td><td>-</td><td>-</td><td>-</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s2i/cria227s2ria227u325083501000i/AT3G50835.1-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 1.00e-06</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>1.00e-06 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0030533</td><td>triplet codon-amino acid adaptor activity</td><td>10/200</td><td>2.64</td><td>1.63e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0000496</td><td>base pairing</td><td>10/200</td><td>2.64</td><td>1.63e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>5</td><td>GO:0000498</td><td>base pairing with RNA</td><td>10/200</td><td>2.64</td><td>1.63e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0060090</td><td>molecular adaptor activity</td><td>10/200</td><td>2.64</td><td>1.63e-03</td><td>-</td><td>yes</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>element</td><td>-</td><td>40/200</td><td>1.67</td><td>3.71e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transposable_element_gene</td><td>-</td><td>39/200</td><td>1.66</td><td>5.00e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transposable</td><td>-</td><td>39/200</td><td>1.66</td><td>5.03e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>athila</td><td>-</td><td>10/200</td><td>3.02</td><td>5.46e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>pre_trna</td><td>-</td><td>10/200</td><td>2.64</td><td>1.63e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>pseudogene</td><td>-</td><td>20/200</td><td>1.94</td><td>1.63e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>transposase</td><td>-</td><td>11/200</td><td>2.42</td><td>2.18e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>anticodon</td><td>-</td><td>10/200</td><td>2.53</td><td>2.20e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>value</td><td>-</td><td>28/200</td><td>1.67</td><td>2.73e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[M]:Molecular function(Gene ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html> AT3G50835.1 0.0 without_OMAT_gene